NIH Human Microbiome Project 2


Reads generated by Illumina wgs sequencing were mapped on to a database of reference genomes in order to calculate organism abundance.

For each sample, we provide three files:

  • A tab delimited abundance table, indicating depth and breath of mapping to each reference
  • A metrics file, summarizing the number of reads mapped versus the number that aligned to a reference
  • Mapping alignment files in bam format

Protocols and Tools